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CNVfinder 1.0.0b5 documentation
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A
add_chromosomes() (cnvfinder.ideogram.Ideogram method)
add_data() (cnvfinder.ideogram.Ideogram method)
add_data_above() (cnvfinder.ideogram.Ideogram method)
add_data_below() (cnvfinder.ideogram.Ideogram method)
add_legend() (cnvfinder.ideogram.Ideogram method)
analyze_plot() (cnvfinder.cnvdetector.CNVTest method)
C
calc_baf() (cnvfinder.vcfhandler.VCF static method)
cluster_baf() (cnvfinder.vcfhandler.VCFTest method)
CNVConfig (class in cnvfinder.cnvdetector)
cnvfinder.bedloader (module)
cnvfinder.cnvdetector (module)
cnvfinder.ideogram (module)
cnvfinder.nrrhandler (module)
cnvfinder.tsvparser (module)
cnvfinder.vcfhandler (module)
CNVTest (class in cnvfinder.cnvdetector)
compare() (cnvfinder.vcfhandler.VCFTest method)
compute_metrics() (cnvfinder.nrrhandler.NRRList method)
count() (cnvfinder.nrrhandler.NRR method)
count_label_by_pool() (cnvfinder.nrrhandler.NRR method)
CoverageFileParser (class in cnvfinder.tsvparser)
create_column_map() (cnvfinder.tsvparser.CoverageFileParser static method)
create_ideogram() (cnvfinder.cnvdetector.CNVTest method)
D
define_targets() (cnvfinder.bedloader.ROI method)
(cnvfinder.tsvparser.CoverageFileParser method)
E
eliminate_vars() (cnvfinder.vcfhandler.VCFTest method)
F
filter() (cnvfinder.nrrhandler.NRRTest method)
(cnvfinder.vcfhandler.VCFTest method)
G
getin() (cnvfinder.vcfhandler.VCFTest method)
getview() (cnvfinder.vcfhandler.VCFTest method)
I
Ideogram (class in cnvfinder.ideogram)
iterchroms() (cnvfinder.vcfhandler.VCFTest method)
L
load() (cnvfinder.nrrhandler.NRR method)
load_amplicons() (cnvfinder.bedloader.ROI static method)
load_filtered_out() (cnvfinder.vcfhandler.VCFTest method)
M
make_mean() (cnvfinder.nrrhandler.NRRList method)
make_ratio() (cnvfinder.nrrhandler.NRRTest method)
merge() (cnvfinder.nrrhandler.NRRTest method)
N
NRR (class in cnvfinder.nrrhandler)
NRRConfig (class in cnvfinder.nrrhandler)
NRRList (class in cnvfinder.nrrhandler)
NRRTest (class in cnvfinder.nrrhandler)
P
plot() (cnvfinder.nrrhandler.NRRTest method)
R
readcount() (cnvfinder.nrrhandler method)
ROI (class in cnvfinder.bedloader)
S
save() (cnvfinder.cnvdetector.CNVTest method)
(cnvfinder.ideogram.Ideogram method)
(cnvfinder.nrrhandler.NRR method)
save_filtered_out() (cnvfinder.vcfhandler.VCFTest method)
split() (cnvfinder.vcfhandler.VCFTest method)
summary() (cnvfinder.cnvdetector.CNVTest method)
(cnvfinder.nrrhandler.NRRTest method)
V
VCF (class in cnvfinder.vcfhandler)
VCFConfig (class in cnvfinder.vcfhandler)
VCFList (class in cnvfinder.vcfhandler)
vcfplot() (cnvfinder.vcfhandler.VCFTest method)
VCFTest (class in cnvfinder.vcfhandler)
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